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Best Gut Microbiome Tests in 2026

Compare gut microbiome tests and clinical stool panels by what they measure, price and help understanding your results.

79 tests from 36 providers

Sort by
ProviderWhat it coversTest type & supportPrice
FloréGI Pathogen Basic PanelTest by US BioTek
Checks selected bacteria, fungi and yeast, parasites, viruses, named pathogens

+ hidden blood, antibiotic resistance (partial)

Targeted stool panel (PCR)
Est. $158.95
5 more matching options from Floré
FloréNirvanaBiome Microbiome TestTest by NirvanaBiome
Surveys bacteria, fungi and yeast, parasites (partial), viruses, named pathogens

+ diversity, microbial function

Broad microbe profile (shotgun DNA)
Est. $258.95
FloréTiny Health Microbiome TestTest by Tiny Health
Surveys bacteria, fungi and yeast, parasites (partial), viruses, named pathogens

+ diversity, microbial function

Broad microbe profile (shotgun DNA)
Est. $258.95
FloréTest + 3-month formula
Surveys bacteria, fungi and yeast, parasites, viruses, named pathogens (partial)

+ diversity

Broad microbe profile (shotgun DNA)
$384
FloréGutIQTest by US BioTek
Includes bacteria, fungi and yeast, parasites, viruses, named pathogens

+ digestive health checks, diversity, microbial function, antibiotic resistance

Broad microbe profile + Targeted stool panel (shotgun DNA + PCR)
Est. $483.95
FloréJona Health Microbiome TestTest by Jona
Surveys bacteria, fungi and yeast, parasites, viruses, named pathogens

+ diversity, microbial function (partial)

Broad microbe profile (shotgun DNA)
Est. $494.95
AffinityDNAGut Microbiome Test
Surveys bacteria

+ diversity, microbial function (partial)

Bacterial profile (16S)
$169
EasyDNAGut Microbiome Test
Surveys bacteria

+ diversity, microbial function (partial)

Bacterial profile (16S)
$169
BIOHMGut Test
Surveys bacteria, fungi and yeast, named pathogens

+ diversity

Bacterial & fungal profile (16S + ITS)

Written results review

$194.99
BiomesightGut Microbiome TestTested by Transnetyx
Surveys bacteria, named pathogens

+ diversity, microbial function (partial)

Bacterial profile (16S)
$199
PharmToTableGut Performance Report (Vitract GutScan)Test by Vitract
Surveys bacteria

+ diversity

Bacterial profile (16S)
$199
1 more matching option from PharmToTable
PharmToTableAdvanced GI Test (US BioTek)Tested by US BioTek Laboratories
Checks selected bacteria, fungi and yeast, parasites, viruses, named pathogens

+ digestive health checks, antibiotic resistance (partial)

Targeted stool panel (PCR + culture)
$486.39
VitractGutScan
Surveys bacteria

+ diversity

Bacterial profile (16S)
$199
OmbreGut Health Test
Surveys bacteria, named pathogens

+ diversity

Bacterial profile (16S)
$229.99
NirvanaBiomeGut Microbiome Test
Surveys bacteria, fungi and yeast, parasites (partial), viruses, named pathogens

+ diversity, microbial function, antibiotic resistance

Broad microbe profile (shotgun DNA)
Est. $249
Tiny HealthAdult Gut Health Test
Surveys bacteria, fungi and yeast, parasites (partial), viruses, named pathogens

+ diversity, microbial function

Broad microbe profile (shotgun DNA)

Coaching · Group session

$249
VerisanaComprehensive Gut Biome & Health Test
Checks selected bacteria, fungi and yeast, named pathogens

+ secretory IgA

Targeted stool panel (culture)
Est. $249.95
1 more matching option from Verisana
VerisanaLeaky Gut Test Complete
Checks selected bacteria, fungi and yeast

+ secretory IgA

Targeted stool panel (culture)
Est. $249.95
WispGut Health Panel
Includes bacteria, fungi and yeast
Method not stated

Messaging about results

Est. $250
ViomeGut Intelligence
Surveys bacteria, fungi and yeast, parasites, viruses

+ diversity, microbial function

Broad microbe profile (RNA)
$279
1 more matching option from Viome
ViomeFull Body Intelligence
Surveys bacteria, fungi and yeast, parasites, viruses

+ diversity, microbial function

Broad microbe profile (RNA)
$399
DirectLabsGI360 MicrobiomeTested by Doctor’s Data
Checks selected bacteria

+ diversity

Targeted stool panel (PCR)
$299
4 more matching options from DirectLabs
DirectLabsGI360 EssentialsTested by Doctor’s Data
Checks selected bacteria, fungi and yeast, parasites, viruses, named pathogens

+ diversity, antibiotic resistance (partial)

Targeted stool panel (PCR + culture + microscopy)
$429
DirectLabsGI-MAPTested by Diagnostic Solutions Laboratory
Checks selected bacteria, fungi and yeast, parasites, viruses, named pathogens

+ digestive health checks, antibiotic resistance

Targeted stool panel (PCR)
Est. $445
DirectLabsGI Effects ComprehensiveTested by Genova Diagnostics
Checks selected bacteria, fungi and yeast, parasites, named pathogens

+ digestive health checks, antibiotic resistance (partial)

Targeted stool panel (PCR + culture + microscopy)
Est. $489
DirectLabsGI360 ProfileTested by Doctor’s Data
Checks selected bacteria, fungi and yeast, parasites, viruses, named pathogens

+ digestive health checks, diversity, antibiotic resistance (partial)

Targeted stool panel (PCR + culture + microscopy)
$529
Life ExtensionCPP Culture, PCR + ParasitologyTested by Doctor’s Data
Checks selected bacteria, fungi and yeast, parasites, viruses, named pathogens

+ antibiotic resistance (partial)

Targeted stool panel (PCR + culture + microscopy)

Live consultation

$299
2 more matching options from Life Extension
Life ExtensionComprehensive Stool Analysis with ParasitologyTested by Doctor’s Data
Checks selected bacteria, fungi and yeast, parasites, viruses, named pathogens

+ digestive health checks, antibiotic resistance (partial)

Targeted stool panel (PCR + culture + microscopy)

Live consultation

$449
Life ExtensionGI360Tested by Doctor’s Data
Checks selected bacteria, fungi and yeast, parasites, viruses, named pathogens

+ digestive health checks, diversity, antibiotic resistance (partial)

Targeted stool panel (PCR + culture + microscopy)

Live consultation

$599
True Health LabsGI360 Microbiome ProfileTested by Doctor’s Data
Checks selected bacteria

+ diversity

Targeted stool panel (PCR)
$299
4 more matching options from True Health Labs
True Health LabsGI-MAP Stool Test USATested by Diagnostic Solutions Laboratory
Checks selected bacteria, fungi and yeast, parasites, viruses, named pathogens

+ digestive health checks, antibiotic resistance

Targeted stool panel (PCR)
$499
True Health LabsGI360 ProfileTested by Doctor’s Data
Checks selected bacteria, fungi and yeast, parasites, viruses, named pathogens

+ digestive health checks, diversity, antibiotic resistance (partial)

Targeted stool panel (PCR + culture + microscopy)
$599
True Health LabsGI Effects ComprehensiveTested by Genova Diagnostics
Checks selected bacteria, fungi and yeast, parasites, named pathogens

+ digestive health checks, antibiotic resistance (partial)

Targeted stool panel (PCR + culture + microscopy)
$659
True Health LabsGut ZoomerTested by Vibrant America
Checks selected bacteria, fungi and yeast, parasites, viruses, named pathogens

+ digestive health checks, diversity, antibiotic resistance

Targeted stool panel (PCR)
$859
RxHomeTestGut Health – Microbiome Test
Checks selected bacteria, fungi and yeast, parasites, viruses, named pathogens

+ antibiotic resistance

Targeted stool panel (PCR)
$319.99
4 more matching options from RxHomeTest
RxHomeTestComprehensive Stool AnalysisTested by Doctor’s Data
Checks selected bacteria, fungi and yeast, viruses, named pathogens

+ digestive health checks, antibiotic resistance (partial)

Targeted stool panel (PCR + culture)
$349.99
RxHomeTestGI-MAPTested by Diagnostic Solutions Laboratory
Checks selected bacteria, fungi and yeast, parasites, viruses, named pathogens

+ digestive health checks, antibiotic resistance

Targeted stool panel (PCR)
$399.99
RxHomeTestGI360Tested by Doctor’s Data
Checks selected bacteria, fungi and yeast, parasites, viruses, named pathogens

+ digestive health checks, diversity, antibiotic resistance (partial)

Targeted stool panel (PCR + culture + microscopy)
$599.99
RxHomeTestGutIQ ProfileTested by US BioTek Laboratories
Includes bacteria, fungi and yeast, parasites, viruses, named pathogens

+ digestive health checks, diversity, microbial function, antibiotic resistance

Broad microbe profile + Targeted stool panel (shotgun DNA + PCR)
$599.99
Genova ConnectGut Health: Standard (GI Effects Fundamentals)
Checks selected bacteria, fungi and yeast, named pathogens

+ digestive health checks, antibiotic resistance (partial)

Targeted stool panel (culture)
$385
3 more matching options from Genova Connect
Genova ConnectMicrobiome (Microbiomix)
Surveys bacteria, fungi and yeast, parasites (partial), named pathogens

+ diversity, microbial function

Broad microbe profile (shotgun DNA)
$480
Genova ConnectGut Health: Preferred (GI Effects)
Checks selected bacteria, fungi and yeast, parasites, named pathogens

+ digestive health checks, antibiotic resistance (partial)

Targeted stool panel (PCR + culture + microscopy)
$489
Genova ConnectGut Health: Premier (GI Effects with Microbiomix)
Includes bacteria, fungi and yeast, parasites, named pathogens

+ digestive health checks, diversity, microbial function, antibiotic resistance (partial)

Broad microbe profile + Targeted stool panel (shotgun DNA + PCR + culture + microscopy)
$889
New York buyers must collect samples outside New York.
Institute for Digestive Wellbeing (IFDW)GI360 MicrobiomeTested by Doctor’s Data
Checks selected bacteria

+ diversity

Targeted stool panel (PCR)
$387
1 more matching option from Institute for Digestive Wellbeing (IFDW)
New York buyers must collect samples outside New York.
Institute for Digestive Wellbeing (IFDW)GI-MAP (Written Report)Tested by Diagnostic Solutions Laboratory
Checks selected bacteria, fungi and yeast, parasites, viruses, named pathogens

+ digestive health checks, antibiotic resistance

Targeted stool panel (PCR)
$497
GutIDCore Gut Insights
Surveys bacteria, named pathogens (partial)

+ diversity, microbial function (partial)

Bacterial profile (long-read)
$399
1 more matching option from GutID
GutIDComplete Microbiome Assessment
Surveys bacteria, named pathogens (partial)

+ diversity, microbial function (partial)

Bacterial profile (long-read)
$599
InstalabGI Effects Gut PathogenTested by Genova Diagnostics
Checks selected bacteria, fungi and yeast, parasites, named pathogens

+ antibiotic resistance (partial)

Targeted stool panel (PCR + culture + microscopy)
Est. $399
7 more matching options from Instalab
InstalabGI Effects FundamentalsTested by Genova Diagnostics
Checks selected bacteria, fungi and yeast, named pathogens

+ digestive health checks, antibiotic resistance (partial)

Targeted stool panel (culture)
$499
InstalabGI Effects MicrobialTested by Genova Diagnostics
Checks selected bacteria, fungi and yeast, parasites, named pathogens

+ antibiotic resistance (partial)

Targeted stool panel (PCR + culture + microscopy)
Est. $499
InstalabGI-MAPTested by Diagnostic Solutions Laboratory
Checks selected bacteria, fungi and yeast, parasites, viruses, named pathogens

+ digestive health checks, antibiotic resistance

Targeted stool panel (PCR)
$499
InstalabGI Advanced Microbiome ProfileTested by US BioTek Laboratories
Checks selected bacteria, fungi and yeast, parasites, viruses, named pathogens

+ digestive health checks, antibiotic resistance (partial)

Targeted stool panel (PCR + culture)
$539
InstalabGI Effects ComprehensiveTested by Genova Diagnostics
Checks selected bacteria, fungi and yeast, parasites, named pathogens

+ digestive health checks, antibiotic resistance (partial)

Targeted stool panel (PCR + culture + microscopy)
$599
InstalabMicrobiomixTested by Genova Diagnostics
Surveys bacteria, fungi and yeast, parasites (partial), named pathogens

+ diversity, microbial function

Broad microbe profile (shotgun DNA)
Est. $639
InstalabGut ZoomerTested by Vibrant America
Checks selected bacteria, fungi and yeast, parasites, viruses, named pathogens

+ digestive health checks, diversity, antibiotic resistance

Targeted stool panel (PCR)
$849
LifespanningRxGutID Core Gut InsightsTest by GutID
Surveys bacteria, named pathogens (partial)

+ diversity, microbial function (partial)

Bacterial profile (long-read)
$399
1 more matching option from LifespanningRx
LifespanningRxGutID Complete Microbiome AssessmentTest by GutID
Surveys bacteria, named pathogens (partial)

+ diversity, microbial function (partial)

Bacterial profile (long-read)
Est. $599
GetBloodWorxGI-MAP with ZonulinTested by Diagnostic Solutions Laboratory
Checks selected bacteria, fungi and yeast, parasites, viruses, named pathogens

+ digestive health checks, antibiotic resistance

Targeted stool panel (PCR)
Est. $450
Walk-In LabGI360 EssentialsTested by Doctor’s Data
Checks selected bacteria, fungi and yeast, parasites, viruses, named pathogens

+ diversity, microbial function (partial), antibiotic resistance (partial)

Targeted stool panel (PCR + culture + microscopy)
$455
2 more matching options from Walk-In Lab
Walk-In LabGI Effects ComprehensiveTested by Genova Diagnostics
Checks selected bacteria, fungi and yeast, parasites, named pathogens

+ digestive health checks, antibiotic resistance (partial)

Targeted stool panel (PCR + culture + microscopy)
$541
Walk-In LabGI360 ProfileTested by Doctor’s Data
Checks selected bacteria, fungi and yeast, parasites, viruses, named pathogens

+ digestive health checks, diversity, microbial function (partial), antibiotic resistance (partial)

Targeted stool panel (PCR + culture + microscopy)
$555
Lab Test ShopGI Effects FundamentalsTested by Genova Diagnostics
Checks selected bacteria, fungi and yeast, named pathogens

+ digestive health checks, antibiotic resistance (partial)

Targeted stool panel (culture)
Est. $482
3 more matching options from Lab Test Shop
Lab Test ShopGI-MAPTested by Diagnostic Solutions Laboratory
Checks selected bacteria, fungi and yeast, parasites, viruses, named pathogens

+ digestive health checks, antibiotic resistance

Targeted stool panel (PCR)
Est. $582
Lab Test ShopGI Effects ComprehensiveTested by Genova Diagnostics
Checks selected bacteria, fungi and yeast, parasites, named pathogens

+ digestive health checks, antibiotic resistance (partial)

Targeted stool panel (PCR + culture + microscopy)
Est. $589
Lab Test ShopGut Zoomer 3.0Tested by Vibrant America
Checks selected bacteria, fungi and yeast, parasites, viruses, named pathogens

+ digestive health checks, diversity, antibiotic resistance

Targeted stool panel (PCR)
Est. $780
EverlywellJona Gut Microbiome TestTest by Jona
Surveys bacteria, fungi and yeast, parasites, viruses, named pathogens

+ diversity, microbial function (partial)

Broad microbe profile (shotgun DNA)
$485
JonaGut Microbiome Test
Surveys bacteria, fungi and yeast, parasites, viruses, named pathogens

+ diversity, microbial function (partial)

Broad microbe profile (shotgun DNA)
$485
1 more matching option from Jona
JonaClinical Advanced
Surveys bacteria, fungi and yeast, parasites, viruses, named pathogens

+ digestive health checks, diversity, microbial function (partial)

Broad microbe profile (shotgun DNA)
$495
My Labs For LifeGI-MAPTested by Diagnostic Solutions Laboratory
Checks selected bacteria, fungi and yeast, parasites, viruses, named pathogens

+ digestive health checks, antibiotic resistance

Targeted stool panel (PCR)
$488.95
1 more matching option from My Labs For Life
My Labs For LifeGut ZoomerTested by Vibrant America
Checks selected bacteria, fungi and yeast, parasites, viruses, named pathogens

+ digestive health checks, diversity, microbial function (partial), antibiotic resistance

Targeted stool panel (PCR)
$688.95
Posity WellnessDigestion Decoded (GI-MAP + Report)Tested by Diagnostic Solutions Laboratory
Checks selected bacteria, fungi and yeast, parasites, viruses, named pathogens

+ digestive health checks, antibiotic resistance

Targeted stool panel (PCR)

Written results review

Est. $489
GIMapTest.comGI-MAP StandardTested by Diagnostic Solutions Laboratory
Checks selected bacteria, fungi and yeast, parasites, viruses, named pathogens

+ digestive health checks, antibiotic resistance

Targeted stool panel (PCR)
$497
MyMedLabGI Effects Comprehensive (MMX 2200)Tested by Genova Diagnostics
Checks selected bacteria, fungi and yeast, parasites, named pathogens

+ digestive health checks, antibiotic resistance (partial)

Targeted stool panel (PCR + culture + microscopy)
$525
Naturally Nourished (Ali Miller RD)GI Map Stool Test + Customized Email ReviewTested by Diagnostic Solutions Laboratory
Checks selected bacteria, fungi and yeast, parasites, viruses, named pathogens

+ digestive health checks, antibiotic resistance

Targeted stool panel (PCR)

Clinician review

$525
Montana Apothecary & CompoundingGut ZoomerTested by Vibrant America
Checks selected bacteria, fungi and yeast, parasites, viruses, named pathogens

+ digestive health checks, diversity, antibiotic resistance

Targeted stool panel (PCR)

Live consultation

Est. $650
Marek DiagnosticsGut Health: Digestion & Inflammation Analysis
Checks selected bacteria, fungi and yeast

+ digestive health checks

Targeted stool panel (culture)
Est. $660
1 more matching option from Marek Diagnostics
Marek DiagnosticsGut Health: Microbiome & Parasite Analysis
Checks selected bacteria, fungi and yeast, parasites, named pathogens

+ digestive health checks, antibiotic resistance (partial)

Targeted stool panel (PCR + culture + microscopy)
Est. $860
Nutritionally Yours Test KitsGut ZoomerTested by Vibrant America
Checks selected bacteria, fungi and yeast, parasites, viruses, named pathogens

+ digestive health checks, diversity, antibiotic resistance

Targeted stool panel (PCR)

Coaching

Est. $750
Any Lab Test NowGut IQ Complete GI Microbiome PanelTest by US BioTek
Includes bacteria, fungi and yeast, parasites, viruses, named pathogens

+ digestive health checks, diversity, microbial function, antibiotic resistance

Broad microbe profile + Targeted stool panel (shotgun DNA + PCR)
$759

How we compare tests →